Basic Information
Locus ID:
gene.Thate05g28940
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 478021050 | 478031998 | + | gene.Thate05g28940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.14 | 62,242.19 Da | 91.30 | 63.49 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 21 | 58 | 2.0E-12 | IPR014977 |
| Pfam | PF08879 | WRC | 141 | 179 | 8.5E-13 | IPR014977 |
| Pfam | PF08879 | WRC | 269 | 307 | 9.0E-14 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 20 | 64 | 18.227808 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 140 | 184 | 18.688169 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 468 | 515 | 9.804232 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 268 | 312 | 19.601221 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| Coils | Coil | Coil | 196 | 220 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21430.1 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase. | 0 |
| RefSeq | XP_010277904.1 | PREDICTED: lysine-specific demethylase JMJ25-like [Nelumbo nucifera] | 0 |
| Q8H1S7 | Lysine-specific demethylase JMJ28 OS=Arabidopsis thaliana OX=3702 GN=JMJ28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8B9N8 | lysine-specific demethylase JMJ25-like OS=Nelumbo nucifera OX=4432 GN=LOC104612247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010020, COCNU_14G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714750, gene-LOC103724011 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g28940 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3344, AH03.3939, BH03.3531, BH03.4231, CH03.3740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572320, gene-QOZ80_7BG0603800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0135860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040264 |
| Poaceae | Oryza coarctata | 2 | Oco13G009860, Oco14G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G312900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304293, Pt_Chr0304340 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004580, Chr24G009860, Chr27G012740, Chr28G009210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G388900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026830, gene_TRIDC2BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G207000.1, TraesCS2B02G234100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb106740_P001, Zm00001eb323940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10645, nbis-gene-56244, nbis-gene-726 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5336, Zma_g6641 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00430 |
| Salicaceae | Populus euphratica | 1 | populus_peu18286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20610.v3.1 |