Basic Information
Locus ID:
gene.Thate05g28660
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 475820738 | 475912420 | + | gene.Thate05g28660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 96,781.73 Da | 41.26 | 80.62 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 260 | 1.5272E-61 | - |
| Pfam | PF13925 | con80 domain of Katanin | 721 | 878 | 4.0E-46 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 8.4E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 3.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 5.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 49 | 86 | 4.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 293 | 8.55E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 265 | 1.3E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 142 | 1.4E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.079 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.8E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 4.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 7.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.989036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 14.081032 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 43 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.688272 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 12.710129 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 18.194637 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 6.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 6.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 6.4E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 877 | 18.664352 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 631 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008800146.2 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like [Phoenix dactylifera] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CIU6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103714616 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology