Basic Information
Locus ID:
gene.Thate05g28420
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 473702921 | 473703292 | + | gene.Thate05g28420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 13,758.92 Da | 43.00 | 94.15 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 25 | 119 | 3.4E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 23 | 120 | 8.11E-31 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 8 | 122 | 1.0E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 25 | 119 | 9.6E-39 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 22 | 120 | 1.1E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 47 | 62 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 58 | 73 | 1.5E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 80 | 94 | 1.5E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 23 | 36 | 1.5E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 21 | 120 | 18.726021 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_042504186.1 | 40S ribosomal protein S20-2 [Macadamia integrifolia] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8AEZ9 | 40S ribosomal protein S20-2 OS=Nelumbo nucifera OX=4432 GN=LOC104602247 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology