Basic Information
Locus ID:
gene.Thate05g27650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
WD repeat-containing protein 44
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 465332622 | 465339439 | - | gene.Thate05g27650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 20,464.11 Da | 54.57 | 79.89 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 154 | 186 | 6.59E-6 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 108 | 188 | 3.1E-8 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 188 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 188 | 10.68014 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53500.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009361332.2 | uncharacterized protein LOC103951627 [Pyrus x bretschneideri] | 0 |
| TrEMBL | A0A540N280 | WD_REPEATS_REGION domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_009713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025700 |
| Apiaceae | Apium graveolens | 1 | Ag9G02435 |
| Arecaceae | Cocos nucifera | 2 | scaffold004835G000020, scaffold032126G000040 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2446.V1.1, AsparagusV1_05.2985.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1051 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g25420, gene.Thate04g17100, gene.Thate04g19200 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005988 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29776 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3179 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31898, nbis-gene-361 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21262, nbisL1-mrna-22663 |
| Salicaceae | Populus euphratica | 1 | populus_peu10399 |