halophFGD

Basic Information

Locus ID: gene.Thate05g27640

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: nucleic acid binding protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	465331531	465332545	-	gene.Thate05g27640

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.53	23,678.77 Da	25.06	77.44	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	191	212	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	191	223	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein.
RefSeq	XP_043695368.1	binding partner of ACD11 1-like isoform X2 [Telopea speciosissima]
Swiss-Prot	Q9LFD5	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1
TrEMBL	A0A5B6YYF0	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_006160 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13784, jg4976, jg7501
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15045, gene_3445
Amaranthaceae	Atriplex hortensis	2	Ah004355, Ah018359
Amaranthaceae	Beta vulgaris	2	BVRB_3g049740, BVRB_5g106850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14829, Sbi_jg24553, Sbi_jg55606, Sbi_jg8400
Amaranthaceae	Salicornia europaea	2	Seu_jg11647, Seu_jg26164
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010884, GOSA_00017978
Amaranthaceae	Suaeda glauca	4	Sgl01076, Sgl06162, Sgl51261, Sgl56565
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002661, gene:ENSEOMG00000004610 ... gene:ENSEOMG00000021384, gene:ENSEOMG00000023921, gene:ENSEOMG00000032573, gene:ENSEOMG00000042792
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0007440, CQ.Regalona.r1.3BG0007490 ... CQ.Regalona.r1.5AG0001910, CQ.Regalona.r1.5BG0002030
Anacardiaceae	Pistacia vera	5	pistato.v30029640, pistato.v30030430, pistato.v30095070 ... pistato.v30202460, pistato.v30218780
Apiaceae	Apium graveolens	4	Ag2G02166, Ag5G01929, Ag6G00815, AgUnG00049
Arecaceae	Cocos nucifera	6	COCNU_02G005450, COCNU_03G009670, COCNU_07G003630 ... COCNU_08G005230, COCNU_09G000830, COCNU_10G002350
Arecaceae	Phoenix dactylifera	6	gene-LOC103696028, gene-LOC103696757, gene-LOC103698037 ... gene-LOC103714581, gene-LOC103723068, gene-LOC120110791
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.2977.V1.1, AsparagusV1_04.1433.V1.1 ... AsparagusV1_06.1111.V1.1, AsparagusV1_10.105.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G20491, Ftri13G28051, Ftri18G13844, Ftri5G27562
Brassicaceae	Arabidopsis thaliana	4	AT1G67950.3, AT4G17720.1, AT5G16840.2, AT5G46870.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001235m.g.v1.0, Thhalv10014416m.g.v1.0 ... Thhalv10018968m.g.v1.0, Thhalv10025761m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g11670.v2.2, Sp5g22970.v2.2, Sp6g27280.v2.2 ... Sp7g16390.v2.2
Brassicaceae	Brassica nigra	7	BniB02g045900.2N, BniB02g063520.2N, BniB02g072510.2N ... BniB03g045300.2N, BniB05g018650.2N, BniB05g022340.2N, BniB08g008180.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G0281, Ceq09G0783, Ceq09G1783
Casuarinaceae	Casuarina glauca	3	Cgl01G0294, Cgl09G0848, Cgl09G1955
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g04360, gene.Cymno16g05860
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06930, gene.Thate05g05260, gene.Thate05g06920 ... gene.Thate05g27640, gene.Thate08g11570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8023
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1190, evm.TU.LG03.1775, evm.TU.LG05.810
Plantaginaceae	Plantago ovata	2	Pov_00011249, Pov_00041390
Plumbaginaceae	Limonium bicolor	5	Lb1G04242, Lb2G12361, Lb2G14346, Lb6G30601, Lb6G30602
Poaceae	Echinochloa crus-galli	12	AH01.830, AH06.70, AH07.3087, AH09.2154, BH01.975, BH06.67 ... BH07.2910, BH09.2322, CH01.1018, CH06.63, CH07.2990, CH09.2463
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0141800, gene-QOZ80_3AG0218890 ... gene-QOZ80_3BG0264130, gene-QOZ80_4AG0305450, gene-QOZ80_6AG0506270, gene-QOZ80_6BG0458340
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0197560.1, HORVU.MOREX.r3.4HG0337590.1 ... HORVU.MOREX.r3.6HG0605870.1, HORVU.MOREX.r3.7HG0638160.1
Poaceae	Lolium multiflorum	6	gene-QYE76_024455, gene-QYE76_037429, gene-QYE76_045963 ... gene-QYE76_046021, gene-QYE76_062407, gene-QYE76_062904
Poaceae	Oryza coarctata	6	Oco04G019520, Oco06G022580, Oco07G014690, Oco08G014140 ... Oco11G000560, Oco12G000480
Poaceae	Oryza sativa	4	LOC_Os03g50560.1, LOC_Os04g50790.1, LOC_Os04g53330.2 ... LOC_Os06g02240.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G105100, gene-BS78_06G211900 ... gene-BS78_10G007500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0105022, Pt_Chr0203851, Pt_Chr0301528, Pt_Chr0301563 ... Pt_Chr0402317
Poaceae	Sporobolus alterniflorus	14	Chr01G006940, Chr04G027130, Chr06G004580, Chr0G014600 ... Chr10G000560, Chr11G024560, Chr12G030520, Chr14G000650, Chr14G008070, Chr15G006030, Chr23G003290, Chr25G004170, Chr26G014500, Chr30G004030
Poaceae	Thinopyrum elongatum	4	Tel2E01G754800, Tel4E01G085600, Tel6E01G490800 ... Tel7E01G061400
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG063780, gene_TRIDC2BG067910 ... gene_TRIDC4AG041520, gene_TRIDC4AG067730, gene_TRIDC4BG007670, gene_TRIDC6AG040780, gene_TRIDC6BG047740
Poaceae	Triticum aestivum	12	TraesCS2A02G445100.1, TraesCS2B02G466100.1 ... TraesCS2D02G444000.1, TraesCS4A02G265800.1, TraesCS4A02G458600.1, TraesCS4B02G049100.1, TraesCS4D02G049200.1, TraesCS6A02G265600.1, TraesCS6B02G292900.1, TraesCS6D02G249000.1, TraesCS7A02G030900.2, TraesCS7D02G027100.1
Poaceae	Zea mays	6	Zm00001eb055110_P003, Zm00001eb072190_P002 ... Zm00001eb216160_P002, Zm00001eb268790_P001, Zm00001eb379100_P001, Zm00001eb430040_P001
Poaceae	Zoysia japonica	5	nbis-gene-14842, nbis-gene-22178, nbis-gene-22729 ... nbis-gene-40232, nbis-gene-51216
Poaceae	Zoysia macrostachya	5	Zma_g16933, Zma_g20356, Zma_g28984, Zma_g31228, Zma_g633
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.662, evm.TU.LG04.110, evm.TU.LG10.682 ... evm.TU.LG17.694
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g25940, gene.Posoc09g00620
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.556, evm.TU.Scaffold_15_RagTag.266 ... evm.TU.Scaffold_2_RagTag.1695
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17738, nbisL1-mrna-17796, nbisL1-mrna-26509 ... nbisL1-mrna-3504
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17704, nbisL1-mrna-5683
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13982, nbisL1-mrna-17581, nbisL1-mrna-8190
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.167, evm.TU.utg000007l.49 ... evm.TU.utg000009l.283
Rhizophoraceae	Kandelia obovata	2	Maker00005597, Maker00018498
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11554, nbisL1-mrna-16256
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10556, nbisL1-mrna-16733, nbisL1-mrna-2684
Salicaceae	Populus euphratica	4	populus_peu03219, populus_peu07236, populus_peu21235 ... populus_peu34068
Solanaceae	Lycium barbarum	3	gene-LOC132602746, gene-LOC132632250, gene-LOC132635329
Solanaceae	Solanum chilense	2	SOLCI000095800, SOLCI002049900
Solanaceae	Solanum pennellii	3	gene-LOC107014544, gene-LOC107023935, gene-LOC107026626
Tamaricaceae	Reaumuria soongarica	3	gene_13994, gene_14297, gene_4996
Tamaricaceae	Tamarix chinensis	3	TC01G3647, TC01G4052, TC06G2831
Zosteraceae	Zostera marina	2	Zosma04g18280.v3.1, Zosma06g28360.v3.1