Basic Information
Locus ID:
gene.Thate05g26910
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
UBP16
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 452457125 | 452508544 | - | gene.Thate05g26910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 98,636.52 Da | 57.02 | 68.67 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 2.4E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 392 | 694 | 3.9E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 389 | 700 | 4.12E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 119 | 6.63E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 119 | 6.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 384 | 708 | 3.5E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 12.216257 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 392 | 697 | 53.135487 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 393 | 408 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 777 | - | - |
| Coils | Coil | Coil | 35 | 55 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_008802270.2 | ubiquitin carboxyl-terminal hydrolase 18-like [Phoenix dactylifera] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N1Q0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Cocos nucifera OX=13894 GN=COCNU_05G005120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology