Basic Information
Locus ID:
gene.Thate05g25870
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 424641908 | 424684178 | + | gene.Thate05g25870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 48,737.99 Da | 57.56 | 66.97 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 164 | 238 | 1.18352E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 284 | 358 | 1.3389E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 80 | 150 | 2.31147E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 351 | 3.4E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 80 | 146 | 7.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 165 | 235 | 5.8E-18 | IPR000504 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 3 | 67 | 2.2E-7 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 77 | 241 | 1.49E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 277 | 367 | 4.07E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 160 | 256 | 9.5E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 17 | 159 | 8.3E-30 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 261 | 362 | 3.4E-22 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 164 | 237 | 0.017 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 79 | 148 | 3.3E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 285 | 354 | 12.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 285 | 354 | 9.2E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 164 | 237 | 4.4E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 163 | 241 | 17.131182 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 358 | 14.726371 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 78 | 152 | 15.220978 | IPR000504 |
| Coils | Coil | Coil | 22 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_042486815.1 | oligouridylate-binding protein 1-like [Macadamia integrifolia] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BPP7 | oligouridylate-binding protein 1B-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103702254 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology