Basic Information
Locus ID:
gene.Thate05g24310
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 348625969 | 348671999 | + | gene.Thate05g24310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 44,770.86 Da | 68.67 | 76.56 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.60445E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 190 | 227 | 4.5E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 4.3E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 302 | 358 | 7.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 383 | 418 | 2.5E-10 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 7.37E-24 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 366 | 425 | 3.12E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 299 | 364 | 1.57E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 185 | 237 | 1.56E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 182 | 232 | 7.9E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 294 | 358 | 9.2E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 375 | 422 | 7.9E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 6.9E-30 | - |
| SMART | SM00727 | CBM | 300 | 343 | 6.8E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 383 | 420 | 1.2E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.2E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 189 | 229 | 0.17 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 426 | 1.3E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 187 | 230 | 11.58301 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.674952 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 380 | 421 | 14.233691 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 409 | 424 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 408 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 350 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 393 | 1.7E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 155 | - | - |
| Coils | Coil | Coil | 329 | 349 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_019259261.1 | PREDICTED: ubiquitin receptor RAD23d-like [Nicotiana attenuata] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A314LE94 | Ubiquitin receptor RAD23 OS=Nicotiana attenuata OX=49451 GN=RAD23D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology