Basic Information
Locus ID:
gene.Thate05g21650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 240776109 | 240791815 | + | gene.Thate05g21650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 171,578.77 Da | 46.06 | 103.98 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 954 | 1248 | 1.09046E-89 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1271 | 1491 | 4.72381E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 637 | 837 | 1.93115E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 323 | 611 | 2.57704E-95 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 655 | 789 | 4.5E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 965 | 1200 | 3.3E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1290 | 1438 | 2.8E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 322 | 590 | 2.2E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1266 | 1498 | 8.74E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 317 | 611 | 1.01E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 631 | 853 | 1.33E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 956 | 1251 | 1.7E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 293 | 620 | 8.5E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1257 | 1508 | 6.9E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 635 | 866 | 1.3E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 916 | 1254 | 5.5E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1299 | 1484 | 6.1E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 664 | 837 | 6.0E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 637 | 860 | 22.389065 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 956 | 1236 | 34.04837 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1273 | 1507 | 16.546757 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 322 | 603 | 30.802681 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 762 | 776 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 909 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_038975230.1 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1Z236 | ABC transporter C family member 9 OS=Anthurium amnicola OX=1678845 GN=ABCC9_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology