halophFGD

Basic Information

Locus ID: gene.Thate05g20560

Species & Taxonomic ID: Thalassia testudinum & 55497

Genome Assembly: GCA_037157565.1

Description: NPR1/NIM1 like defence protein C terminal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	208758691	208900576	-	gene.Thate05g20560

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.63	67,340.01 Da	51.30	86.18	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18310	BTB_POZ_NPR_plant	57	205	8.95368E-56	-
Pfam	PF12796	Ankyrin repeats (3 copies)	292	369	2.1E-7	IPR020683
Pfam	PF00651	BTB/POZ domain	75	154	3.1E-9	IPR000210
Pfam	PF12313	NPR1/NIM1 like defence protein C terminal	386	586	7.2E-68	IPR021094
Pfam	PF11900	Domain of unknown function (DUF3420)	240	287	2.0E-6	IPR024228
SUPERFAMILY	SSF54695	POZ domain	71	203	8.63E-14	IPR011333
SUPERFAMILY	SSF48403	Ankyrin repeat	279	387	4.51E-16	IPR036770
Gene3D	G3DSA:1.25.40.20	-	278	418	3.2E-19	IPR036770
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	54	237	2.0E-21	IPR011333
SMART	SM00248	ANK_2a	310	340	11.0	IPR002110
SMART	SM00248	ANK_2a	344	374	0.0067	IPR002110
SMART	SM00225	BTB_4	76	205	2.2E-10	IPR000210
SMART	SM00248	ANK_2a	281	309	710.0	IPR002110
ProSiteProfiles	PS50097	BTB domain profile.	76	155	15.742047	IPR000210
ProSiteProfiles	PS50088	Ankyrin repeat profile.	344	369	10.36565	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	344	369	10.338512	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14508 (regulatory protein NPR1)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19660.1	NPR1-like protein 4. Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.
RefSeq	XP_010942675.1	BTB/POZ domain and ankyrin repeat-containing protein NPR2 isoform X1 [Elaeis guineensis]
Swiss-Prot	E7BQV0	BTB/POZ domain and ankyrin repeat-containing protein NPR1 OS=Malus hupehensis OX=106556 GN=NPR1 PE=2 SV=2
TrEMBL	A0A8K0N423	BTB/POZ domain and ankyrin repeat-containing protein NPR2 OS=Cocos nucifera OX=13894 GN=COCNU_06G018980 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20876, jg24099, jg32913, jg37460
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9359
Amaranthaceae	Atriplex hortensis	1	Ah015177
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24590, Sbi_jg8451
Amaranthaceae	Salicornia europaea	1	Seu_jg28716
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014746
Amaranthaceae	Suaeda glauca	2	Sgl41783, Sgl46585
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... gene:ENSEOMG00000046682
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030
Anacardiaceae	Pistacia vera	4	pistato.v30013180, pistato.v30078240, pistato.v30108090 ... pistato.v30259540
Apiaceae	Apium graveolens	4	Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479
Arecaceae	Cocos nucifera	5	COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... COCNU_14G001050, COCNU_14G009440
Arecaceae	Phoenix dactylifera	5	gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... gene-LOC103719594, gene-LOC113461809
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191
Brassicaceae	Arabidopsis thaliana	4	AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... Thhalv10024745m.g.v1.0, Thhalv10024746m.g.v1.0, Thhalv10024752m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... Sp7g24140.v2.2
Brassicaceae	Brassica nigra	7	BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... BniB04g023400.2N, BniB05g011310.2N, BniB05g011320.2N, BniB05g016760.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1445, Ceq02G2177, Ceq06G0842
Casuarinaceae	Casuarina glauca	3	Cgl02G1490, Cgl02G2254, Cgl06G0867
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... gene.Thate05g20560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4692, nbisL1-mrna-5499
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... evm.TU.LG12.196, evm.TU.LG12.197
Plantaginaceae	Plantago ovata	3	Pov_00002953, Pov_00031763, Pov_00038621
Plumbaginaceae	Limonium bicolor	1	Lb2G14534
Poaceae	Echinochloa crus-galli	9	AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... BH02.3571, CH01.1308, CH02.3099, CH02.379
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... gene-QOZ80_1BG0061860, gene-QOZ80_1BG0084750, gene-QOZ80_3AG0222500, gene-QOZ80_3AG0222510, gene-QOZ80_3BG0267510, gene-QOZ80_3BG0267520
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... HORVU.MOREX.r3.4HG0333690.1
Poaceae	Lolium multiflorum	3	gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196
Poaceae	Oryza coarctata	6	Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... Oco05G019720, Oco06G020580
Poaceae	Oryza sativa	3	LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G132500, gene-BS78_03G030700 ... gene-BS78_03G288600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542
Poaceae	Sporobolus alterniflorus	10	Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... Chr05G011760, Chr05G024930, Chr07G024440, Chr08G006810, Chr12G028560, Chr12G028580
Poaceae	Thinopyrum elongatum	7	Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... Tel3E01G493300, Tel4E01G041400, Tel7E01G047500, Tel7E01G048700
Poaceae	Triticum dicoccoides	7	gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... gene_TRIDC3BG017420, gene_TRIDC3BG050750, gene_TRIDC4AG045270, gene_TRIDC4BG003310, gene_TRIDC7AG001960
Poaceae	Triticum aestivum	11	TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... TraesCS3B02G123800.1, TraesCS3B02G337700.1, TraesCS3D02G107500.1, TraesCS3D02G302900.1, TraesCS4A02G294400.1, TraesCS4A02G470500.1, TraesCS4B02G018900.2, TraesCS4D02G017500.1, TraesCS7D02G019000.1
Poaceae	Zea mays	3	Zm00001eb065420_P002, Zm00001eb121040_P001 ... Zm00001eb370160_P001
Poaceae	Zoysia japonica	7	nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... nbis-gene-31181, nbis-gene-39456, nbis-gene-39457, nbis-gene-39459
Poaceae	Zoysia macrostachya	6	Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... Zma_g8739
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.1529, evm.TU.LG07.1191
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g21400, gene.Posoc10g09380
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25755
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-4245
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4615
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1031
Rhizophoraceae	Kandelia obovata	1	Maker00000920
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14853, nbisL1-mrna-14854
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1122, nbisL1-mrna-1123
Salicaceae	Populus euphratica	5	populus_peu11921, populus_peu15006, populus_peu29049 ... populus_peu30443, populus_peu32664
Solanaceae	Lycium barbarum	3	gene-LOC132616465, gene-LOC132620290, gene-LOC132621418
Solanaceae	Solanum chilense	1	SOLCI001298000
Solanaceae	Solanum pennellii	3	gene-LOC107011476, gene-LOC107026249, gene-LOC107026404
Tamaricaceae	Reaumuria soongarica	1	gene_6528
Tamaricaceae	Tamarix chinensis	1	TC10G1776
Zosteraceae	Zostera marina	2	Zosma03g24130.v3.1, Zosma06g12380.v3.1