Basic Information
Locus ID:
gene.Thate05g18990
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 172063985 | 172157347 | - | gene.Thate05g18990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 45,020.18 Da | 52.00 | 73.09 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 270 | 297 | 1.1E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 308 | 337 | 1.4E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 304 | 337 | 4.32E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 261 | 299 | 1.57E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 260 | 299 | 2.5E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 371 | 3.2E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 302 | 336 | 3.4E-11 | - |
| SMART | SM00547 | zf_4 | 343 | 367 | 0.018 | IPR001876 |
| SMART | SM00547 | zf_4 | 271 | 295 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 310 | 334 | 4.8E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 308 | 337 | 10.511549 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 298 | 10.150199 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 341 | 370 | 9.924355 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 312 | 331 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 345 | 364 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_010916149.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PC35 | Zinc finger (Ran-binding) family protein OS=Zostera marina OX=29655 GN=ZOSMA_30G00870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology