Basic Information
Locus ID:
gene.Thate05g18780
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 167267101 | 167291920 | + | gene.Thate05g18780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 59,712.63 Da | 47.30 | 85.46 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 161 | 358 | 9.30345E-138 | - |
| CDD | cd18787 | SF2_C_DEAD | 369 | 499 | 5.78295E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 181 | 342 | 1.7E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 382 | 490 | 1.0E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 510 | 3.48E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 529 | 6.5E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 146 | 364 | 1.8E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 175 | 372 | 5.3E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 409 | 490 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 156 | 184 | 10.696912 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 357 | 29.113501 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 368 | 529 | 26.044659 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 303 | 311 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 106 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_020251013.1 | eukaryotic initiation factor 4A-8 [Asparagus officinalis] | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FVV4 | Eukaryotic initiation factor 4A-11 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F23620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology