Basic Information
Locus ID:
gene.Thate05g18050
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 151441112 | 151505120 | - | gene.Thate05g18050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 104,258.50 Da | 51.03 | 76.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 248 | 351 | 5.3E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 822 | 887 | 4.1E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 819 | 896 | 1.21E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 691 | 758 | 8.93E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 363 | 7.93E-19 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 813 | 894 | 2.1E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 394 | 3.6E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 683 | 760 | 3.4E-6 | - |
| SMART | SM00577 | forpap2 | 194 | 367 | 8.5E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 694 | 758 | 2.2E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 820 | 888 | 4.1E-6 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 819 | 889 | 12.936432 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 693 | 759 | 11.091433 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 132 | 383 | 14.561661 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 937 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010918441.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R0I3 | protein-serine/threonine phosphatase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology