Basic Information
Locus ID:
gene.Thate05g13860
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 96100232 | 96141702 | + | gene.Thate05g13860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 159,470.52 Da | 36.66 | 101.39 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 311 | 598 | 1.65854E-100 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 824 | 1.22157E-103 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 968 | 1160 | 3.77056E-52 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1183 | 1403 | 1.8152E-119 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 968 | 1121 | 1.9E-9 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 577 | 4.2E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1202 | 1350 | 2.7E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 642 | 776 | 3.9E-21 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 967 | 1167 | 1.22E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 844 | 7.77E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1178 | 1418 | 2.24E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 606 | 2.88E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 610 | 855 | 5.6E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 300 | 606 | 4.1E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 962 | 1166 | 2.5E-32 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1168 | 1421 | 7.2E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1211 | 1413 | 5.0E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 651 | 824 | 1.1E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 968 | 1148 | 19.789772 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 310 | 590 | 30.430006 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 22.289024 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1185 | 1419 | 16.360016 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_038984667.1 | ABC transporter C family member 3-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AFW1 | ABC transporter C family member 3-like isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103708769 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology