Basic Information
Locus ID:
gene.Thate05g12690
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 81877857 | 81879080 | + | gene.Thate05g12690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.34 | 44,005.91 Da | 51.94 | 108.77 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 131 | 191 | 1.9E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 75 | 5.0E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 378 | 5.61E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 200 | 3.0E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 291 | 378 | 2.5E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 290 | 5.1E-16 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 178 | 202 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 312 | 336 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 154 | 177 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 270 | 47.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_047976594.1 | LRR receptor-like serine/threonine-protein kinase RGI2 [Salvia hispanica] | 0 |
| TrEMBL | A0A7I8KQ58 | LRRNT_2 domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010639 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology