Basic Information
Locus ID:
gene.Thate05g09420
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 55147246 | 55148694 | + | gene.Thate05g09420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 42,995.59 Da | 52.72 | 76.15 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 319 | 359 | 7.0E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 115 | 1.8E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 313 | 364 | 3.66E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 130 | 242 | 5.62E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 122 | 266 | 6.7E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 303 | 364 | 5.9E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 317 | 359 | 10.971794 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_009415924.1 | PREDICTED: F-box protein At1g67340-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804KER5 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_219980.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology