Basic Information
Locus ID:
gene.Thate05g08730
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 50667975 | 50670461 | - | gene.Thate05g08730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 88,473.09 Da | 44.79 | 90.02 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 524 | 802 | 3.81475E-97 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 522 | 800 | 8.7E-42 | IPR001245 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 263 | 284 | 3.9E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 500 | 800 | 2.43E-73 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 172 | 364 | 9.68E-20 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 492 | 599 | 1.7E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 600 | 809 | 5.3E-54 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 159 | 379 | 1.7E-21 | IPR009091 |
| SMART | SM00220 | serkin_6 | 518 | 804 | 2.1E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 518 | 804 | 38.576645 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 646 | 658 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 524 | 546 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_009399156.1 | PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Musa acuminata subsp. malaccensis] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8KHL6 | Protein kinase domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_05007148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology