Basic Information
Locus ID:
gene.Thate05g07990
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 46233818 | 46235728 | - | gene.Thate05g07990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 68,262.61 Da | 43.85 | 92.81 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 554 | 573 | 1.7 | IPR001611 |
| Pfam | PF12937 | F-box-like | 44 | 73 | 3.1E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 78 | 1.02E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 361 | 632 | 4.32E-17 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 160 | 425 | 9.58E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 344 | 1.2E-36 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 43 | 77 | 5.8E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 434 | 636 | 2.3E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 345 | 433 | 6.1E-10 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 551 | 575 | 240.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 229 | 254 | 0.0076 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 524 | 549 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 281 | 305 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 498 | 522 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 577 | 602 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 177 | 202 | 0.0055 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 255 | 280 | 0.092 | IPR006553 |
| SMART | SM00256 | fbox_2 | 44 | 87 | 0.0082 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 203 | 228 | 0.0032 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 469 | 494 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 331 | 240.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 180.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010251723.1 | PREDICTED: EIN3-binding F-box protein 1-like [Nelumbo nucifera] | 0 |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology