Basic Information
Locus ID:
gene.Thate05g07140
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 41361910 | 41451600 | + | gene.Thate05g07140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 122,546.02 Da | 52.35 | 65.68 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 645 | 701 | 1.33656E-28 | - |
| Pfam | PF01426 | BAH domain | 378 | 490 | 4.3E-13 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 647 | 700 | 2.4E-8 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 712 | 1067 | 4.5E-32 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 535 | 1068 | 1.84E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 645 | 706 | 4.12E-11 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 645 | 1087 | 2.3E-204 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 520 | 623 | 4.3E-15 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 864 | 1034 | 2.3E-204 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 312 | 477 | 7.4E-49 | IPR043151 |
| SMART | SM00298 | chromo_7 | 645 | 704 | 7.7E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 375 | 492 | 1.2E-24 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 375 | 492 | 20.390451 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 646 | 711 | 11.634401 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 535 | 1075 | 45.514889 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 716 | 728 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 669 | 689 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 759 | 773 | 7.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 536 | 552 | 7.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 805 | 818 | 7.9E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 314 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010908353.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Elaeis guineensis] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1YKA9 | DNA (Cytosine-5)-methyltransferase CMT2 OS=Anthurium amnicola OX=1678845 GN=CMT2_5 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology