Basic Information
Locus ID:
gene.Thate05g06920
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 40285260 | 40326852 | + | gene.Thate05g06920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 31,110.62 Da | 33.59 | 74.45 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 6.7E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 79 | 3.76E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 9.5E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 1.8E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.957128 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 292 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_010933436.1 | binding partner of ACD11 1 [Elaeis guineensis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IJ87 | Binding partner of ACD11 1 OS=Cocos nucifera OX=13894 GN=COCNU_09G000830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology