Basic Information
Locus ID:
gene.Thate05g06260
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 35433636 | 35434490 | + | gene.Thate05g06260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 31,836.45 Da | 45.20 | 83.77 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 167 | 252 | 5.1E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 23 | 145 | 1.5E-9 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 276 | 1.27E-88 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 6 | 278 | 2.7E-102 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_042480429.1 | probable CCR4-associated factor 1 homolog 7 [Macadamia integrifolia] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A484LTS6 | poly(A)-specific ribonuclease OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS21726 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology