Basic Information
Locus ID:
gene.Thate05g04730
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 26372469 | 26396683 | - | gene.Thate05g04730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 52,801.88 Da | 54.47 | 72.00 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 115 | 185 | 2.27591E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 318 | 392 | 1.29281E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 199 | 273 | 3.44083E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 320 | 385 | 7.5E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 270 | 8.6E-20 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 181 | 1.2E-12 | IPR000504 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 49 | 103 | 7.06E-6 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 311 | 394 | 1.49E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 191 | 277 | 8.19E-29 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 97 | 191 | 4.16E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 197 | 277 | 7.8E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 295 | 397 | 4.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 46 | 196 | 4.3E-28 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 199 | 272 | 0.0052 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 114 | 183 | 1.8E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 199 | 272 | 7.9E-26 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 319 | 388 | 1.1E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 114 | 183 | 22.0 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 276 | 17.813398 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 318 | 392 | 15.476809 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 187 | 15.647363 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 314 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010939881.1 | oligouridylate-binding protein 1B isoform X1 [Elaeis guineensis] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AH62 | oligouridylate-binding protein 1-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104600504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology