Basic Information
Locus ID:
gene.Thate05g03390
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18247800 | 18267654 | + | gene.Thate05g03390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 45,164.29 Da | 35.53 | 89.93 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 68 | 390 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 71 | 333 | 3.0E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 70 | 332 | 2.74E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 333 | 390 | 6.28E-17 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 98 | 399 | 9.3E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 120 | 291 | 1.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 68 | 388 | 3.6E-144 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 262 | 337 | 28.664997 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 99 | 257 | 29.360714 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 276 | 284 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 228 | 257 | 4.0E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 308 | 337 | 4.0E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 156 | 185 | 4.0E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 362 | 379 | 4.0E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 273 | 301 | 4.0E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 190 | 219 | 4.0E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 69 | 394 | 45.012543 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010904644.1 | DNA repair protein recA homolog 1, chloroplastic [Elaeis guineensis] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9Q8E5 | DNA repair protein recA homolog 1, chloroplastic OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105032022 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology