Basic Information
Locus ID:
gene.Thate05g03360
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18078953 | 18106771 | + | gene.Thate05g03360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 64,601.77 Da | 32.41 | 88.75 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 3.62613E-53 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 273 | 391 | 2.1E-4 | IPR013979 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 557 | 2.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 514 | 0.038 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 6.72E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 521 | 2.3E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 575 | 1.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 6.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 67.0 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 0.006 | IPR006595 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 3.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 303 | 10.23196 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.233023 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 9.145986 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 355 | 389 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 559 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 349 | 8.992876 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 374 | 388 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 1.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008790475.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y0T8 | WD repeat-containing protein 26 OS=Anthurium amnicola OX=1678845 GN=wdr26_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology