Basic Information
Locus ID:
gene.Thate05g02340
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 12367912 | 12411754 | + | gene.Thate05g02340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 122,230.96 Da | 49.87 | 82.53 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 943 | 1052 | 2.15211E-46 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 348 | 689 | 2.54964E-82 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 805 | 841 | 1.3E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 360 | 767 | 2.1E-65 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 944 | 1042 | 1.1E-13 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 800 | 852 | 2.91E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 333 | 689 | 8.27E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 697 | 1100 | 3.19E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 890 | 1101 | 2.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 563 | 703 | 2.1E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 320 | 415 | 5.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 454 | 544 | 3.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 789 | 855 | 9.4E-11 | IPR013083 |
| SMART | SM00490 | helicmild6 | 959 | 1042 | 2.8E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 344 | 668 | 1.8E-26 | IPR014001 |
| SMART | SM00184 | ring_2 | 805 | 843 | 3.1E-5 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 936 | 1096 | 14.392861 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 805 | 841 | 10.615647 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 472 | 651 | 11.678539 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 820 | 829 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 72 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010908905.1 | helicase-like transcription factor CHR28 isoform X1 [Elaeis guineensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QG79 | helicase-like transcription factor CHR28 isoform X3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105035156 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology