Basic Information
Locus ID:
gene.Thate05g01680
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 8689620 | 8714826 | - | gene.Thate05g01680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 51,923.56 Da | 28.63 | 104.57 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 235 | 334 | 4.31732E-29 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 38 | 217 | 2.8E-18 | IPR039010 |
| Pfam | PF00168 | C2 domain | 233 | 327 | 1.1E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 231 | 360 | 1.34E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 228 | 387 | 1.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 234 | 331 | 2.8E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 216 | 332 | 21.116854 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 36 | 218 | 23.536694 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 275 | 288 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 297 | 305 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 250 | 262 | 1.1E-5 | IPR000008 |
| Coils | Coil | Coil | 360 | 387 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_002276807.1 | PREDICTED: synaptotagmin-5 isoform X2 [Vitis vinifera] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | F6I345 | Synaptotagmin-5 OS=Vitis vinifera OX=29760 GN=VIT_15s0048g01410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology