Basic Information
Locus ID:
gene.Thate05g01250
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 6165909 | 6177815 | + | gene.Thate05g01250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 45,800.50 Da | 49.47 | 83.45 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 288 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 290 | 6.92E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 314 | 1.5E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 248 | 289 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 33 | 71 | 52.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40810.1 | homolog of yeast autophagy 18C. | 0 |
| RefSeq | XP_019706260.1 | autophagy-related protein 18c isoform X1 [Elaeis guineensis] | 0 |
| Q8GYD7 | Autophagy-related protein 18c OS=Arabidopsis thaliana OX=3702 GN=ATG18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PI79 | autophagy-related protein 18c isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105044863 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology