Basic Information
Locus ID:
gene.Thate04g29670
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 519595784 | 519620680 | + | gene.Thate04g29670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 50,028.99 Da | 57.39 | 75.94 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 417 | 459 | 2.2666E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 401 | 459 | 9.13E-7 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 402 | 459 | 9.804232 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 360 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020578692.1 | uncharacterized protein LOC110023553 [Phalaenopsis equestris] | 0 |
| TrEMBL | A0A6I9QCA4 | uncharacterized protein LOC105033517 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033517 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18328 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_11178, gene_11179, gene_11180 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015741, Ah039279 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g189480, BVRB_8g191700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011783, gene:ENSEOMG00000033264 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0013600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130630 |
| Apiaceae | Apium graveolens | 1 | Ag10G00005 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707428 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3430.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G14485, Ftri3G28296, Ftri8G28209, Ftri9G19027 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0430 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0456, Cgl02G0458, Cgl05G2137 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.725 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020104 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18767 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3762, BH07.3586, CH07.3654 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148750, gene-QOZ80_2BG0204130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0623650.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024120, Oco04G024590 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G304300, gene-BS78_04G304400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202880, Pt_Chr0202900 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000560, Chr09G017820, Chr0G032620, Chr13G002010 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G630200 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G355100.1, TraesCS6B02G387900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb192530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39940, nbis-gene-39941 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14612, Zma_g17318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19100 |
| Salicaceae | Populus euphratica | 1 | populus_peu04134 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633090 |
| Solanaceae | Solanum chilense | 1 | SOLCI002329900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014525 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15057_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0783 |