Basic Information
Locus ID:
gene.Thate04g29560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 518986667 | 518999493 | + | gene.Thate04g29560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 17,389.36 Da | 30.93 | 77.80 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 5.89834E-32 | - |
| Pfam | PF08207 | Elongation factor P (EF-P) KOW-like domain | 24 | 72 | 2.5E-4 | IPR013185 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | 4.0E-29 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 1.26E-25 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 3.41E-28 | IPR008991 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 158 | 4.2E-34 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 1.1E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 1.2E-33 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 154 | 2.7E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 157 | 2.3E-67 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_031092457.1 | eukaryotic translation initiation factor 5A-2 [Ipomoea triloba] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | S8E4S5 | Eukaryotic translation initiation factor 5A OS=Genlisea aurea OX=192259 GN=M569_03977 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology