Basic Information
Locus ID:
gene.Thate04g27800
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Lateral organ boundaries (LOB) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 508303478 | 508313136 | - | gene.Thate04g27800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 44,419.29 Da | 45.00 | 75.27 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 2 | 83 | 4.2E-17 | IPR001245 |
| Pfam | PF03195 | Lateral organ boundaries (LOB) domain | 186 | 282 | 1.9E-41 | IPR004883 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 95 | 2.97E-28 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 100 | 2.6E-29 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 259 | 15.043536 | IPR000719 |
| ProSiteProfiles | PS50891 | LOB domain profile. | 185 | 286 | 27.030809 | IPR004883 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 52 | 64 | - | IPR008271 |
| Coils | Coil | Coil | 265 | 292 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65620.1 | Lateral organ boundaries (LOB) domain family protein. required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. | 0 |
| RefSeq | XP_008807271.2 | protein ASYMMETRIC LEAVES 2 [Phoenix dactylifera] | 0 |
| Q32SG3 | LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8KFZ5 | LOB domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_05007264 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 6 | Ah006924, Ah025967, Ah029039, Ah029060, Ah029069, Ah029072 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51577, Sbi_jg51578 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020759 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G08520 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2172, Ceq01G2211 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2412, Cgl01G2458 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04300 |
| Hydrocharitaceae | Thalassia testudinum | 32 | gene.Thate01g01650, gene.Thate01g01660, gene.Thate01g01680 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0250360 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG008820, gene_TRIDC2BG010620 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-58004 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.413, evm.TU.Scaffold_6_RagTag.1830 |
| Zosteraceae | Zostera marina | 2 | Zosma04g11040.v3.1, Zosma06g12330.v3.1 |