Basic Information
Locus ID:
gene.Thate04g27510
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 505833561 | 505867895 | + | gene.Thate04g27510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 40,961.52 Da | 42.00 | 94.50 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 69 | 105 | 4.48015E-10 | - |
| Pfam | PF00889 | Elongation factor TS | 133 | 373 | 2.0E-52 | IPR014039 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 119 | 373 | 2.45E-40 | IPR036402 |
| SUPERFAMILY | SSF46934 | UBA-like | 68 | 117 | 1.43E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 65 | 117 | 7.4E-13 | - |
| Gene3D | G3DSA:1.10.286.20 | - | 287 | 331 | 1.7E-40 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 118 | 227 | 1.1E-18 | IPR036402 |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 231 | 372 | 1.7E-40 | IPR036402 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 67 | 377 | 2.4E-60 | IPR001816 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 137 | 147 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 68 | 378 | 43.176842 | IPR001816 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11120.1 | translation elongation factor Ts (EF-Ts), putative. | 0 |
| RefSeq | XP_020109532.1 | elongation factor Ts, mitochondrial [Ananas comosus] | 0 |
| B4FHF0 | Elongation factor Ts, mitochondrial OS=Zea mays OX=4577 GN=EFTS PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5GVG5 | Elongation factor Ts, mitochondrial OS=Ananas comosus OX=4615 GN=LOC109724947 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg270, jg271, jg31506, jg31511, jg31717, jg800 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035893 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39862, Sbi_jg55196 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14466 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014234 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12358, Sgl17637 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017529, gene:ENSEOMG00000034904 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023100, CQ.Regalona.r1.1BG0001120 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101820, pistato.v30112030 |
| Apiaceae | Apium graveolens | 1 | Ag11G03211 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702347, gene-LOC103710649 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.1069.V1.1, AsparagusV1_05.888.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G31006 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028718m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g036340.2N, BniB08g050930.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0683 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0662 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0306s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3035 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.813 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025161, Pov_00032642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24275 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.2706, AH02.2112, AH08.1172, BH02.2181, BH08.1143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0524550, gene-QOZ80_6BG0478070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034006 |
| Poaceae | Oryza coarctata | 2 | Oco15G006600, Oco16G006420 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g25290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G057000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400098 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G022380, Chr06G024120 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G020700, Tel7E01G578800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG001580, gene_TRIDC5AG001600 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G009300.1, TraesCS7A02G343400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb160260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46616 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23930 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.502, evm.TU.LG12.1217 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1444 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20598 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14366 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21436 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.906 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4632 |
| Salicaceae | Populus euphratica | 1 | populus_peu26842 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005200000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007168 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29697_chr10_-, gene_9047 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0144, TC05G0253 |
| Zosteraceae | Zostera marina | 1 | Zosma03g28920.v3.1 |