Basic Information
Locus ID:
gene.Thate04g27480
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
ARP8
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 505428334 | 505532932 | + | gene.Thate04g27480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 47,611.42 Da | 43.19 | 82.93 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 82 | 218 | 8.16943E-6 | - |
| Pfam | PF00022 | Actin | 129 | 402 | 1.8E-32 | IPR004000 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 44 | 1.31E-8 | IPR036047 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 195 | 404 | 4.93E-42 | IPR043129 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 81 | 201 | 1.23E-12 | IPR043129 |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 229 | 312 | 1.3E-54 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 186 | 384 | 1.3E-54 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 128 | 406 | 1.3E-54 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 54 | 1.3E-5 | - |
| SMART | SM00268 | actin_3 | 79 | 414 | 5.6E-14 | IPR004000 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56180.1 | actin-related protein 8. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. | 0 |
| RefSeq | XP_008782953.1 | actin-related protein 8 isoform X2 [Phoenix dactylifera] | 0 |
| A8WAT2 | Actin-related protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=ARP8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B7BPY4 | actin-related protein 8 isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103702345 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21660 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12089, gene_2165 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018116 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18616, Sbi_jg37043 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008093, gene:ENSEOMG00000030083 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000070, CQ.Regalona.r1.4BG0026780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150870 |
| Apiaceae | Apium graveolens | 1 | Ag2G02316 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702345 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.894.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G12622, Ftri2G33224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G56180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013450m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g18030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g035010.2N, BniB05g035850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1568 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1731 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27480 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2121 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004314 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11743 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2642, BH09.2871, CH09.3078 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300200, gene-QOZ80_4BG0330940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0208800.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035881, gene-QYE76_047216 |
| Poaceae | Oryza coarctata | 2 | Oco07G018650, Oco08G017940 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G275300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300343, Pt_Chr0300378 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G021650, Chr23G001520, Chr23G015100, Chr25G001150 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG075330, gene_TRIDC2BG082440 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G539700.1, TraesCS2B02G570000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6134 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22177 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.674, evm.TU.LG09.1840 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.14 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14630 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22383 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.7 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010724 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7962 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22544 |
| Salicaceae | Populus euphratica | 2 | populus_peu00019, populus_peu00022 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617404 |
| Solanaceae | Solanum chilense | 1 | SOLCI002465000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026085, gene-LOC114075243 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16946 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0592 |