Basic Information
Locus ID:
gene.Thate04g25430
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 491628680 | 491649180 | - | gene.Thate04g25430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 24,685.75 Da | 50.65 | 55.51 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 140 | 187 | 5.7E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 135 | 6.1E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 189 | 3.1E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 197 | 2.3E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 133 | 7.6E-29 | IPR043151 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 3.0E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 7.8E-36 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 22.727106 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 8.9916 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_020082910.1 | chromatin remodeling protein EBS-like [Ananas comosus] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5ENP3 | chromatin remodeling protein EBS-like OS=Ananas comosus OX=4615 GN=LOC109706482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology