Basic Information
Locus ID:
gene.Thate04g24770
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 486255283 | 486261387 | + | gene.Thate04g24770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 52,791.91 Da | 50.53 | 79.63 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 226 | 273 | 1.5E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 211 | 2.2E-13 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 1.9E-4 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 378 | 2.34E-5 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 279 | 1.33E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 148 | 3.7E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 281 | 9.4E-26 | IPR036770 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 1.2 | IPR002110 |
| SMART | SM00184 | ring_2 | 324 | 372 | 8.2E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 226 | 255 | 1.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.051 | IPR002110 |
| SMART | SM00248 | ANK_2a | 183 | 212 | 2.7E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 226 | 257 | 10.630358 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.720098 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.27054 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 183 | 212 | 11.558956 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 226 | 258 | 11.8347 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 373 | 9.877997 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.39561 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 183 | 215 | 12.23535 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.134453 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 339 | 348 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010914066.1 | probable E3 ubiquitin-protein ligase XBOS32 [Elaeis guineensis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9QRT9 | probable E3 ubiquitin-protein ligase XBOS32 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105039574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology