Basic Information
Locus ID:
gene.Thate04g24230
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 481352489 | 481359361 | - | gene.Thate04g24230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 56,422.87 Da | 42.02 | 97.47 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 150 | 198 | 1.8E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 220 | 268 | 1.2E-8 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 111 | 144 | 2.3E-7 | IPR002885 |
| SUPERFAMILY | SSF81383 | F-box domain | 276 | 344 | 2.09E-9 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 201 | 289 | 2.4E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 61 | 200 | 3.4E-31 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 189 | 222 | 4.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 224 | 257 | 1.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 153 | 186 | 1.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 119 | 152 | 2.7E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 116 | 150 | 12.441133 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 151 | 185 | 12.92343 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | 9.667924 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | 11.246351 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20270.1 | lipid-binding serum glycoprotein family protein. | 0 |
| RefSeq | XP_021681959.1 | uncharacterized protein LOC110665942 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A3S3MUK4 | F-box domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01139300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5515 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26801, Sbi_jg33767 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8456 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011704 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73567, Sgl77118 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007168, gene:ENSEOMG00000008317 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0007790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713112 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.618.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020156m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1074 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.113 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034023 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24111, Lb5G27651 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2601, CH03.2809 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0492400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006347 |
| Poaceae | Oryza coarctata | 2 | Oco17G008410, Oco18G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G228400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705362 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G001220, Chr10G014720, Chr11G007500, Chr14G016500 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G438100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG041420, gene_TRIDC5BG045290 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G275000.1, TraesCS5B02G274800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10407 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30571 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.229, evm.TU.LG24.475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.113 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13701 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17754 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3095 |
| Salicaceae | Populus euphratica | 1 | populus_peu05955 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633599 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014262 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30890_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0643 |