Basic Information
Locus ID:
gene.Thate04g23780
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 477606478 | 477614718 | + | gene.Thate04g23780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 161,500.41 Da | 42.50 | 105.98 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 890 | 1180 | 3.45799E-79 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1203 | 1423 | 3.78226E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 585 | 790 | 4.443E-93 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 272 | 558 | 5.84694E-85 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 613 | 742 | 8.3E-13 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 273 | 537 | 2.0E-17 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 892 | 1135 | 5.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1222 | 1370 | 7.6E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 810 | 2.3E-46 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 890 | 1185 | 2.35E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1196 | 1430 | 3.55E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 255 | 565 | 4.19E-28 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 577 | 837 | 2.2E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1188 | 1441 | 8.3E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 240 | 567 | 4.4E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 854 | 1186 | 3.8E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1231 | 1422 | 5.0E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 616 | 790 | 2.0E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 892 | 1168 | 31.84655 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1205 | 1439 | 18.067358 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 585 | 813 | 20.408281 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 274 | 550 | 27.659666 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 715 | 729 | - | IPR017871 |
| Coils | Coil | Coil | 427 | 447 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_009385139.1 | PREDICTED: putative ABC transporter C family member 15 [Musa acuminata subsp. malaccensis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S8J6M6 | ABC transporter C family member 15 OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t24160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology