Basic Information
Locus ID:
gene.Thate04g22820
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 462133887 | 462139752 | + | gene.Thate04g22820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 51,658.38 Da | 46.76 | 72.81 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 280 | 344 | 5.34425E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 65 | 150 | 4.62758E-47 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 280 | 347 | 3.9E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 68 | 150 | 1.8E-14 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 268 | 351 | 5.24E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 61 | 159 | 1.83E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 263 | 353 | 5.1E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 57 | 163 | 2.4E-23 | IPR036431 |
| SMART | SM00398 | hmgende2 | 279 | 348 | 1.1E-15 | IPR009071 |
| SMART | SM01014 | ARID_2 | 60 | 150 | 4.4E-26 | - |
| SMART | SM00501 | bright_3 | 64 | 155 | 8.4E-26 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 63 | 154 | 22.523582 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 280 | 347 | 13.956162 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010908015.1 | high mobility group B protein 15 [Elaeis guineensis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QEC9 | high mobility group B protein 15 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology