Basic Information
Locus ID:
gene.Thate04g21860
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 442628804 | 442657371 | + | gene.Thate04g21860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 49,893.54 Da | 53.73 | 62.53 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 298 | 365 | 2.94117E-8 | - |
| CDD | cd00780 | NTF2 | 14 | 134 | 1.17348E-47 | IPR018222 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 18 | 134 | 1.0E-31 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 298 | 361 | 1.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 293 | 405 | 1.33E-15 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 14 | 134 | 1.95E-38 | IPR032710 |
| Gene3D | G3DSA:3.30.70.330 | - | 288 | 414 | 1.1E-11 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 6 | 138 | 1.4E-40 | - |
| SMART | SM00360 | rrm1_1 | 297 | 369 | 2.7E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 296 | 383 | 9.660917 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 18 | 134 | 33.348652 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 177 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_008792919.2 | nuclear transport factor 2-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8BBX8 | ras GTPase-activating protein-binding protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104609434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology