Basic Information
Locus ID:
gene.Thate04g21780
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 441715822 | 441717335 | - | gene.Thate04g21780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 49,199.75 Da | 45.68 | 80.74 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 48 | 377 | 2.4E-53 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 46 | 391 | 8.78E-50 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 284 | 354 | 4.23E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 63 | 377 | 1.5E-76 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 283 | 354 | 1.5E-76 | IPR029070 |
| SMART | SM00636 | 2g34 | 43 | 383 | 1.2E-54 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 43 | 400 | 46.323112 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 437 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017701878.2 | class V chitinase-like [Phoenix dactylifera] | 0 |
| A0A072UR65 | Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A843TLB1 | GH18 domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_004832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology