Basic Information
Locus ID:
gene.Thate04g21640
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 439968653 | 439969630 | - | gene.Thate04g21640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 36,500.96 Da | 82.09 | 54.34 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 277 | 314 | 1.0417E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 274 | 316 | 1.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 320 | 4.2E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 325 | 7.8E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 277 | 314 | 6.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 277 | 315 | 10.689412 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 208 | - | - |
| Coils | Coil | Coil | 189 | 218 | - | - |
| Coils | Coil | Coil | 256 | 276 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_010927669.1 | uncharacterized protein LOC105049647 [Elaeis guineensis] | 0 |
| TrEMBL | A0A843XHG9 | RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_051680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology