Basic Information
Locus ID:
gene.Thate04g21560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 439228772 | 439377254 | - | gene.Thate04g21560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 108,143.38 Da | 42.70 | 80.69 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 779 | 934 | 1.20684E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 335 | 933 | 6.0E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 42 | 150 | 1.1E-19 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 20 | 150 | 1.57E-23 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 333 | 936 | 6.08E-108 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 164 | 249 | 7.6E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 163 | 9.5E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 319 | 559 | 1.5E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 665 | 941 | 1.8E-56 | - |
| SMART | SM00695 | dusp | 38 | 153 | 7.6E-22 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 335 | 936 | 56.754753 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 150 | 16.733063 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 878 | 895 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 336 | 351 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 699 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_008794941.2 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Phoenix dactylifera] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7I8KRZ8 | Ubiquitin carboxyl-terminal hydrolase OS=Spirodela intermedia OX=51605 GN=SI8410_08011281 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology