Basic Information
Locus ID:
gene.Thate04g20860
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 423087736 | 423088161 | - | gene.Thate04g20860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 15,558.53 Da | 29.23 | 87.02 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 68 | 138 | 1.9121E-28 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 67 | 136 | 3.3E-27 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 68 | 138 | 9.14E-23 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 2 | 75 | 2.36E-24 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 66 | 1.0E-33 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 68 | 140 | 2.7E-31 | - |
| SMART | SM01376 | eIF_5a_2 | 67 | 136 | 5.2E-29 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 3 | 136 | 5.9E-36 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 140 | 1.4E-55 | IPR001884 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_020549090.1 | eukaryotic translation initiation factor 5A-3 [Sesamum indicum] | 0 |
| Q9AXJ4 | Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8M8UYI0 | Eukaryotic translation initiation factor 5A OS=Sesamum indicum OX=4182 GN=LOC110011879 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology