Basic Information
Locus ID:
gene.Thate04g19660
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 403179448 | 403181938 | + | gene.Thate04g19660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 55,042.92 Da | 50.71 | 73.01 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 472 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.0075 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 335 | 8.9E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 218 | 276 | 6.0E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 183 | 472 | 4.94E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 118 | 475 | 1.8E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 212 | 251 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 472 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 292 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 5.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 385 | 0.0032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 344 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 303 | 337 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 260 | 10.70896 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 322 | 336 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_039142445.1 | cell division cycle 20.2, cofactor of APC complex-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XUV6 | Anaphase-promoting complex subunit cdc20 OS=Anthurium amnicola OX=1678845 GN=cdc20_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology