Basic Information
Locus ID:
gene.Thate04g19650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 402949227 | 402951186 | + | gene.Thate04g19650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 54,016.14 Da | 54.98 | 73.75 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 205 | 263 | 3.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 322 | 5.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 422 | 459 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 372 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 460 | 8.55E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 462 | 6.8E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 5.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 415 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 279 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 0.0093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 459 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 372 | 0.0032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 247 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 243 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 324 | 10.548323 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 225 | 239 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_004951236.1 | cell division cycle 20.2, cofactor of APC complex [Setaria italica] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XUV6 | Anaphase-promoting complex subunit cdc20 OS=Anthurium amnicola OX=1678845 GN=cdc20_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology