Basic Information
Locus ID:
gene.Thate04g19620
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 402597316 | 402605261 | + | gene.Thate04g19620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 62,208.28 Da | 53.87 | 75.86 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 362 | 397 | 2.7E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 280 | 338 | 7.2E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 534 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 447 | 0.0088 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 244 | 535 | 2.38E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 181 | 537 | 9.4E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 397 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 354 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 447 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 490 | 81.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 322 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 406 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 365 | 399 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 384 | 398 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_009384738.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XUV6 | Anaphase-promoting complex subunit cdc20 OS=Anthurium amnicola OX=1678845 GN=cdc20_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology