Basic Information
Locus ID:
gene.Thate04g19490
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 400549415 | 400551260 | - | gene.Thate04g19490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 50,199.75 Da | 54.81 | 73.39 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 320 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 332 | 370 | 0.0067 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 204 | 261 | 1.9E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 454 | 6.41E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 103 | 455 | 3.5E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 328 | 370 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 236 | 0.0066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 413 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 450 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 277 | 0.44 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 204 | 241 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 322 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 204 | 245 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 322 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 307 | 321 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 223 | 237 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_009384738.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XUV6 | Anaphase-promoting complex subunit cdc20 OS=Anthurium amnicola OX=1678845 GN=cdc20_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology