Basic Information
Locus ID:
gene.Thate04g19200
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the eukaryotic ribosomal protein eL19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 388954124 | 388956762 | + | gene.Thate04g19200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 15,126.08 Da | 51.73 | 60.45 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01280 | Ribosomal protein L19e | 79 | 127 | 3.0E-15 | IPR000196 |
| SUPERFAMILY | SSF48140 | Ribosomal protein L19 (L19e) | 76 | 127 | 1.06E-15 | IPR035970 |
| Gene3D | G3DSA:1.10.1200.240 | - | 98 | 129 | 5.4E-8 | - |
| SMART | SM01416 | Ribosomal_L19e_2 | 46 | 131 | 4.9E-5 | IPR000196 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 120 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16780.1 | Ribosomal protein L19e family protein. | 0 |
| RefSeq | XP_031490085.1 | 60S ribosomal protein L19-1 [Nymphaea colorata] | 0 |
| Q9LUQ6 | Large ribosomal subunit protein eL19z OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2U058 | Ribosomal protein L19 OS=Ceratopteris richardii OX=49495 GN=KP509_10G028000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025700 |
| Apiaceae | Apium graveolens | 1 | Ag9G02435 |
| Arecaceae | Cocos nucifera | 2 | scaffold004835G000020, scaffold032126G000040 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2446.V1.1, AsparagusV1_05.2985.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1051 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g25420, gene.Thate04g17100, gene.Thate04g19200 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005988 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29776 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3179 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31898, nbis-gene-361 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21262, nbisL1-mrna-22663 |
| Salicaceae | Populus euphratica | 1 | populus_peu10399 |