Basic Information
Locus ID:
gene.Thate04g17580
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
tetratricopeptide repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 319523224 | 319528903 | - | gene.Thate04g17580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 69,550.83 Da | 53.98 | 90.54 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 321 | 379 | 1.3E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 321 | 383 | 5.53E-20 | IPR011009 |
| SUPERFAMILY | SSF53790 | Tetrapyrrole methylase | 437 | 481 | 1.74E-8 | IPR035996 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 316 | 409 | 1.0E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 146 | 499 | 12.753828 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 334 | 346 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 32 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27460.2 | - | 0 |
| RefSeq | XP_042509515.1 | protein NPGR1 isoform X1 [Macadamia integrifolia] | 0 |
| Q9CB03 | Protein NPGR1 OS=Arabidopsis thaliana OX=3702 GN=NPGR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A371E2F4 | Protein NPGR1 (Fragment) OS=Mucuna pruriens OX=157652 GN=NPGR1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 12 | gene.Thate01g20700, gene.Thate02g25440, gene.Thate03g17220 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067120_P001 |