Basic Information
Locus ID:
gene.Thate04g17570
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 319520589 | 319521033 | - | gene.Thate04g17570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 14,234.45 Da | 37.97 | 64.44 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 41 | 56 | 1.0E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 35 | 75 | 1.53E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 38 | 77 | 9.1E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 40 | 56 | 0.0031 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 59 | 75 | 1.8 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 41 | 56 | 9.059338 | IPR001878 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 12 | gene.Thate01g12700, gene.Thate01g16320, gene.Thate01g21130 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25383 |