Basic Information
Locus ID:
gene.Thate04g17350
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 314414898 | 314463455 | + | gene.Thate04g17350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 70,911.05 Da | 49.91 | 92.67 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 213 | 478 | 1.2E-91 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 114 | 1.9E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 130 | 1.88E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 137 | 9.6E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 134 | 1.8E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 502 | 91.896729 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 11.688375 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 621 | - | - |
| Coils | Coil | Coil | 546 | 580 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_015881141.2 | BTB/POZ domain-containing protein At1g30440 [Ziziphus jujuba var. spinosa] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A061GUE4 | BZIP domain class transcription factor OS=Theobroma cacao OX=3641 GN=TCM_040799 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology